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Database Programmer / Administrator
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Full-time
- DESCRIPTION OF RESPONSIBILITIES: Provide bioinformatics support to perform knowledge engineering functions between the IT staff and the medical research staff.
- Assist the development of custom Python scripts for the rapid analysis of tens to thousands bacterial genomes to include QC thresholds, species identification, typing, cluster detection, prediction of resistance and virulence genes, annotation, variant analysis, and the implementation of NextFlow or similar workflow management system.
- Establish custom scripts and/or ad-hoc access to electronic data systems (e.g., the Composite Health Care System [CHCS] and GENESIS) to maintain and improve automated solutions for data pulls and processing in ARMoR-D or in bioinformatic genome repository.
- Advance the integration of this resource with the corresponding repository of genomic sequences, the MIGHT analytics workflow, and the corresponding clinical metadata in the ARMOR-D database.
- REQUIRED DEGREE/EDUCATION/CERTIFICATION: Security Plus certificationProgramming abilities in other languages such as HTML, Java, JavaScript, PHP, PERL, Rust, SQL will be required.
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